J3_5JUO_008

3D structure

PDB id

5JUO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure I (fully rotated 40S subunit)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

CCAGAC*GGGUG*UUAGACG

Length

18 nucleotides

Bulged bases

5JUO|1|A|G|1445, 5JUO|1|A|C|1447

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5JUO_008 not in the Motif Atlas

Homologous match to J3_8C3A_041

Geometric discrepancy: 0.4157

The information below is about J3_8C3A_041

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_23728.1

Basepair signature

cWW-tWH-F-F-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

2

Unit IDs

5JUO|1|A|C|1215
5JUO|1|A|C|1216
5JUO|1|A|A|1217
5JUO|1|A|G|1218
5JUO|1|A|A|1219
5JUO|1|A|C|1220
*
5JUO|1|A|G|1263
5JUO|1|A|G|1264
5JUO|1|A|G|1265
5JUO|1|A|U|1266
5JUO|1|A|G|1267
*
5JUO|1|A|U|1442
5JUO|1|A|U|1443
5JUO|1|A|A|1444
5JUO|1|A|G|1445
5JUO|1|A|A|1446
5JUO|1|A|C|1447
5JUO|1|A|G|1448

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain AC

uS14 (yeast S29)

Chain CC

eS31 (yeast S31)

Chain HB

eS10 (yeast S10)