J3_5JUO_020
3D structure
- PDB id
- 5JUO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure I (fully rotated 40S subunit)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4 Å
Loop
- Sequence
- GAAA*UGAUAAC*GUC
- Length
- 14 nucleotides
- Bulged bases
- 5JUO|1|B|U|1840, 5JUO|1|B|A|1841
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5JUO_020 not in the Motif Atlas
- Homologous match to J3_8C3A_007
- Geometric discrepancy: 0.2577
- The information below is about J3_8C3A_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_74051.1
- Basepair signature
- cWW-tSH-tWW-tHW-F-F-cWW-cWW
- Number of instances in this motif group
- 3
Unit IDs
5JUO|1|B|G|1488
5JUO|1|B|A|1489
5JUO|1|B|A|1490
5JUO|1|B|A|1491
*
5JUO|1|B|U|1837
5JUO|1|B|G|1838
5JUO|1|B|A|1839
5JUO|1|B|U|1840
5JUO|1|B|A|1841
5JUO|1|B|A|1842
5JUO|1|B|C|1843
*
5JUO|1|B|G|1852
5JUO|1|B|U|1853
5JUO|1|B|C|1854
Current chains
- Chain B
- 25S ribosomal RNA
Nearby chains
- Chain C
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain LA
- eL34 (yeast L34)
- Chain OA
- eL37 (yeast L37)
- Chain QA
- eL39 (yeast L39)
Coloring options: