J3_5JUP_017
3D structure
- PDB id
- 5JUP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure II (mid-rotated 40S subunit)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- UGAACUA*UAG*CGAA
- Length
- 14 nucleotides
- Bulged bases
- 5JUP|1|B|A|817, 5JUP|1|B|G|924
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5JUP_017 not in the Motif Atlas
- Homologous match to J3_8C3A_003
- Geometric discrepancy: 0.1187
- The information below is about J3_8C3A_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_39238.5
- Basepair signature
- cWW-tWH-cWW-tSW-F-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
5JUP|1|B|U|814
5JUP|1|B|G|815
5JUP|1|B|A|816
5JUP|1|B|A|817
5JUP|1|B|C|818
5JUP|1|B|U|819
5JUP|1|B|A|820
*
5JUP|1|B|U|905
5JUP|1|B|A|906
5JUP|1|B|G|907
*
5JUP|1|B|C|923
5JUP|1|B|G|924
5JUP|1|B|A|925
5JUP|1|B|A|926
Current chains
- Chain B
- 25S ribosomal RNA
Nearby chains
- Chain F
- uL2 (yeast L2)
- Chain OA
- eL37 (yeast L37)
- Chain QA
- eL39 (yeast L39)
- Chain S
- eL15 (yeast L15)
Coloring options: