J3_5JUP_021

3D structure

PDB id

5JUP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure II (mid-rotated 40S subunit)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UGAAGUG*CAA*UCUA

Length

14 nucleotides

Bulged bases

5JUP|1|B|A|1482

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5JUP_021 not in the Motif Atlas

Homologous match to J3_5TBW_008

Geometric discrepancy: 0.1133

The information below is about J3_5TBW_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_10154.2

Basepair signature

cWW-tWW-tHW-cWW-tSH-cWW-cWW-F-F

Number of instances in this motif group

3

Unit IDs

5JUP|1|B|U|1479
5JUP|1|B|G|1480
5JUP|1|B|A|1481
5JUP|1|B|A|1482
5JUP|1|B|G|1483
5JUP|1|B|U|1484
5JUP|1|B|G|1485
*
5JUP|1|B|C|1857
5JUP|1|B|A|1858
5JUP|1|B|A|1859
*
5JUP|1|B|U|1871
5JUP|1|B|C|1872
5JUP|1|B|U|1873
5JUP|1|B|A|1874

Current chains

Chain B

25S ribosomal RNA

Nearby chains

Chain LA

eL34 (yeast L34)

Chain W

eL19 (yeast L19)