J3_5JUP_036
3D structure
- PDB id
- 5JUP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure II (mid-rotated 40S subunit)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- CUAUG*CGUCAUAGAG*CGUGUG
- Length
- 21 nucleotides
- Bulged bases
- 5JUP|1|B|U|210
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5JUP_036 not in the Motif Atlas
- Homologous match to J3_8P9A_044
- Geometric discrepancy: 0.1299
- The information below is about J3_8P9A_044
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_97456.1
- Basepair signature
- cWW-cWW-F-F-cSS-cSW-cWW-tHS-cWW-F-cWW-F
- Number of instances in this motif group
- 2
Unit IDs
5JUP|1|B|C|185
5JUP|1|B|U|186
5JUP|1|B|A|187
5JUP|1|B|U|188
5JUP|1|B|G|189
*
5JUP|1|B|C|205
5JUP|1|B|G|206
5JUP|1|B|U|207
5JUP|1|B|C|208
5JUP|1|B|A|209
5JUP|1|B|U|210
5JUP|1|B|A|211
5JUP|1|B|G|212
5JUP|1|B|A|213
5JUP|1|B|G|214
*
5JUP|1|B|C|226
5JUP|1|B|G|227
5JUP|1|B|U|228
5JUP|1|B|G|229
5JUP|1|B|U|230
5JUP|1|B|G|231
Current chains
- Chain B
- 25S ribosomal RNA
Nearby chains
- Chain C
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain DA
- uL24 (yeast L26)
- Chain H
- uL4 (yeast L4)
Coloring options: