J3_5JUS_009
3D structure
- PDB id
- 5JUS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure III (mid-rotated 40S subunit)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.2 Å
Loop
- Sequence
- CCAGAC*GGGUG*UUAGACG
- Length
- 18 nucleotides
- Bulged bases
- 5JUS|1|A|A|1217, 5JUS|1|A|G|1445, 5JUS|1|A|C|1447
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5JUS_009 not in the Motif Atlas
- Homologous match to J3_4V88_038
- Geometric discrepancy: 0.2078
- The information below is about J3_4V88_038
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_75993.1
- Basepair signature
- cWW-tWH-F-F-tHS-cWW-cWW-cWW-F
- Number of instances in this motif group
- 2
Unit IDs
5JUS|1|A|C|1215
5JUS|1|A|C|1216
5JUS|1|A|A|1217
5JUS|1|A|G|1218
5JUS|1|A|A|1219
5JUS|1|A|C|1220
*
5JUS|1|A|G|1263
5JUS|1|A|G|1264
5JUS|1|A|G|1265
5JUS|1|A|U|1266
5JUS|1|A|G|1267
*
5JUS|1|A|U|1442
5JUS|1|A|U|1443
5JUS|1|A|A|1444
5JUS|1|A|G|1445
5JUS|1|A|A|1446
5JUS|1|A|C|1447
5JUS|1|A|G|1448
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain AC
- uS14 (yeast S29)
- Chain CC
- eS31 (yeast S31)
- Chain DC
- yeast eEF2
- Chain HB
- eS10 (yeast S10)
Coloring options: