J3_5JUS_028
3D structure
- PDB id
- 5JUS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure III (mid-rotated 40S subunit)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.2 Å
Loop
- Sequence
- UAUC*GUU*ACUAAUA
- Length
- 14 nucleotides
- Bulged bases
- 5JUS|1|B|A|2887, 5JUS|1|B|U|2888
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5JUS_028 not in the Motif Atlas
- Homologous match to J3_5TBW_014
- Geometric discrepancy: 0.1847
- The information below is about J3_5TBW_014
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_98597.1
- Basepair signature
- cWW-tWW-cHW-tSH-cWW-tSS-F-cSS-cWW
- Number of instances in this motif group
- 2
Unit IDs
5JUS|1|B|U|2886
5JUS|1|B|A|2887
5JUS|1|B|U|2888
5JUS|1|B|C|2889
*
5JUS|1|B|G|2914
5JUS|1|B|U|2915
5JUS|1|B|U|2916
*
5JUS|1|B|A|2930
5JUS|1|B|C|2931
5JUS|1|B|U|2932
5JUS|1|B|A|2933
5JUS|1|B|A|2934
5JUS|1|B|U|2935
5JUS|1|B|A|2936
Current chains
- Chain B
- 25S ribosomal RNA
Nearby chains
- Chain AA
- uL14 (yeast L23)
- Chain G
- uL3 (yeast L3)
- Chain T
- uL13 (yeast L16)
Coloring options: