J3_5JUS_050
3D structure
- PDB id
- 5JUS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure III (mid-rotated 40S subunit)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.2 Å
Loop
- Sequence
- AC*GAUACGU*AAUCU
- Length
- 14 nucleotides
- Bulged bases
- 5JUS|1|C|C|62
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5JUS_050 not in the Motif Atlas
- Homologous match to J3_8C3A_060
- Geometric discrepancy: 0.2568
- The information below is about J3_8C3A_060
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_38265.2
- Basepair signature
- cWW-F-cWW-F-cWW-F-cWW-F
- Number of instances in this motif group
- 8
Unit IDs
5JUS|1|C|A|44
5JUS|1|C|C|45
*
5JUS|1|C|G|58
5JUS|1|C|A|59
5JUS|1|C|U|60
5JUS|1|C|A|61
5JUS|1|C|C|62
5JUS|1|C|G|63
5JUS|1|C|U|64
*
5JUS|1|C|A|96
5JUS|1|C|A|97
5JUS|1|C|U|98
5JUS|1|C|C|99
5JUS|1|C|U|100
Current chains
- Chain C
- 5.8S ribosomal RNA
Nearby chains
- Chain B
- Large subunit ribosomal RNA; LSU rRNA
- Chain CA
- uL23 (yeast L25)
- Chain MA
- uL29 (yeast L35)
- Chain OA
- eL37 (yeast L37)
- Chain QA
- eL39 (yeast L39)
Coloring options: