J3_5JUT_005

3D structure

PDB id

5JUT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure IV (almost non-rotated 40S subunit)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

CCAG*CUAGUAA*UGAUUACG

Length

19 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5JUT_005 not in the Motif Atlas

Homologous match to J3_4V88_035

Geometric discrepancy: 0.3136

The information below is about J3_4V88_035

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_25303.1

Basepair signature

cWW-tSH-tHW-cSH-cSS-tHH-cSS-tWW-F-tHS-cWW-cWW

Number of instances in this motif group

5

Unit IDs

5JUT|1|A|C|1161
5JUT|1|A|C|1162
5JUT|1|A|A|1163
5JUT|1|A|G|1164
*
5JUT|1|A|C|1581
5JUT|1|A|U|1582
5JUT|1|A|A|1583
5JUT|1|A|G|1584
5JUT|1|A|U|1585
5JUT|1|A|A|1586
5JUT|1|A|A|1587
*
5JUT|1|A|U|1609
5JUT|1|A|G|1610
5JUT|1|A|A|1611
5JUT|1|A|U|1612
5JUT|1|A|U|1613
5JUT|1|A|A|1614
5JUT|1|A|C|1615
5JUT|1|A|G|1616

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain CB

uS7 (yeast S5)

Chain NB

uS9 (yeast S16)

Chain ZB

eS28 (yeast S28)