J3_5JUT_034

3D structure

PDB id

5JUT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure IV (almost non-rotated 40S subunit)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

CUAUG*CGUCAUAGAG*CGUGUG

Length

21 nucleotides

Bulged bases

5JUT|1|B|U|210

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5JUT_034 not in the Motif Atlas

Homologous match to J3_8P9A_044

Geometric discrepancy: 0.2248

The information below is about J3_8P9A_044

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_97456.1

Basepair signature

cWW-cWW-F-F-cSS-cSW-cWW-tHS-cWW-F-cWW-F

Number of instances in this motif group

2

Unit IDs

5JUT|1|B|C|185
5JUT|1|B|U|186
5JUT|1|B|A|187
5JUT|1|B|U|188
5JUT|1|B|G|189
*
5JUT|1|B|C|205
5JUT|1|B|G|206
5JUT|1|B|U|207
5JUT|1|B|C|208
5JUT|1|B|A|209
5JUT|1|B|U|210
5JUT|1|B|A|211
5JUT|1|B|G|212
5JUT|1|B|A|213
5JUT|1|B|G|214
*
5JUT|1|B|C|226
5JUT|1|B|G|227
5JUT|1|B|U|228
5JUT|1|B|G|229
5JUT|1|B|U|230
5JUT|1|B|G|231

Current chains

Chain B

25S ribosomal RNA

Nearby chains

Chain DA

uL24 (yeast L26)

Chain H

uL4 (yeast L4)