J3_5JUT_037
3D structure
- PDB id
- 5JUT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure IV (almost non-rotated 40S subunit)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4 Å
Loop
- Sequence
- UU*AGAAG*CAUUUGA
- Length
- 14 nucleotides
- Bulged bases
- 5JUT|1|B|A|1065, 5JUT|1|B|U|1094, 5JUT|1|B|U|1095
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5JUT_037 not in the Motif Atlas
- Homologous match to J3_8P9A_051
- Geometric discrepancy: 0.2607
- The information below is about J3_8P9A_051
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_84137.1
- Basepair signature
- cWW-cWW-cHW-F-cSS-F-cWW
- Number of instances in this motif group
- 4
Unit IDs
5JUT|1|B|U|986
5JUT|1|B|U|987
*
5JUT|1|B|A|1062
5JUT|1|B|G|1063
5JUT|1|B|A|1064
5JUT|1|B|A|1065
5JUT|1|B|G|1066
*
5JUT|1|B|C|1092
5JUT|1|B|A|1093
5JUT|1|B|U|1094
5JUT|1|B|U|1095
5JUT|1|B|U|1096
5JUT|1|B|G|1097
5JUT|1|B|A|1098
Current chains
- Chain B
- 25S ribosomal RNA
Nearby chains
- Chain GA
- eL29 (yeast L29)
- Chain K
- uL30 (yeast L7)
- Chain Y
- eL21 (yeast L21)
Coloring options: