J3_5K0Y_003
3D structure
- PDB id
- 5K0Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- m48S late-stage initiation complex, purified from rabbit reticulocytes lysates, displaying eIF2 ternary complex and eIF3 i and g subunits relocated to the intersubunit face
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.8 Å
Loop
- Sequence
- AGAG*CAG*CUGGAU
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5K0Y_003 not in the Motif Atlas
- Homologous match to J3_4V88_032
- Geometric discrepancy: 0.1727
- The information below is about J3_4V88_032
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_54972.1
- Basepair signature
- cWW-tWW-F-cWW-F-tHS-F-cWW
- Number of instances in this motif group
- 2
Unit IDs
5K0Y|1|A|A|812
5K0Y|1|A|G|813
5K0Y|1|A|A|814
5K0Y|1|A|G|815
*
5K0Y|1|A|C|825
5K0Y|1|A|A|826
5K0Y|1|A|G|827
*
5K0Y|1|A|C|839
5K0Y|1|A|U|840
5K0Y|1|A|G|841
5K0Y|1|A|G|842
5K0Y|1|A|A|843
5K0Y|1|A|U|844
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain I
- 40S ribosomal protein S4
- Chain K
- Ribosomal protein S9 (Predicted)
- Chain s
- 40S ribosomal protein S24
Coloring options: