J3_5K0Y_006
3D structure
- PDB id
- 5K0Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- m48S late-stage initiation complex, purified from rabbit reticulocytes lysates, displaying eIF2 ternary complex and eIF3 i and g subunits relocated to the intersubunit face
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.8 Å
Loop
- Sequence
- CCAG*CCAGUAA*UGAUUAAG
- Length
- 19 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5K0Y_006 not in the Motif Atlas
- Homologous match to J3_4V88_035
- Geometric discrepancy: 0.1951
- The information below is about J3_4V88_035
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_25303.1
- Basepair signature
- cWW-tSH-tHW-cSH-cSS-tHH-cSS-tWW-F-tHS-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
5K0Y|1|A|C|1214
5K0Y|1|A|C|1215
5K0Y|1|A|A|1216
5K0Y|1|A|G|1217
*
5K0Y|1|A|C|1640
5K0Y|1|A|C|1641
5K0Y|1|A|A|1642
5K0Y|1|A|G|1643
5K0Y|1|A|U|1644
5K0Y|1|A|A|1645
5K0Y|1|A|A|1646
*
5K0Y|1|A|U|1668
5K0Y|1|A|G|1669
5K0Y|1|A|A|1670
5K0Y|1|A|U|1671
5K0Y|1|A|U|1672
5K0Y|1|A|A|1673
5K0Y|1|A|A|1674
5K0Y|1|A|G|1675
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain H
- ribosomal protein uS9
- Chain U
- ribosomal protein uS7
- Chain e
- ribosomal protein eS17
- Chain l
- ribosomal protein eS28
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