J3_5K0Y_009
3D structure
- PDB id
- 5K0Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- m48S late-stage initiation complex, purified from rabbit reticulocytes lysates, displaying eIF2 ternary complex and eIF3 i and g subunits relocated to the intersubunit face
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.8 Å
Loop
- Sequence
- CCGGAC*GGGUG*UUAGAUG
- Length
- 18 nucleotides
- Bulged bases
- 5K0Y|1|A|G|1270, 5K0Y|1|A|G|1503
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5K0Y_009 not in the Motif Atlas
- Homologous match to J3_8C3A_041
- Geometric discrepancy: 0.3414
- The information below is about J3_8C3A_041
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_23728.1
- Basepair signature
- cWW-tWH-F-F-tHS-cWW-cWW-cWW-F
- Number of instances in this motif group
- 2
Unit IDs
5K0Y|1|A|C|1268
5K0Y|1|A|C|1269
5K0Y|1|A|G|1270
5K0Y|1|A|G|1271
5K0Y|1|A|A|1272
5K0Y|1|A|C|1273
*
5K0Y|1|A|G|1316
5K0Y|1|A|G|1317
5K0Y|1|A|G|1318
5K0Y|1|A|U|1319
5K0Y|1|A|G|1320
*
5K0Y|1|A|U|1500
5K0Y|1|A|U|1501
5K0Y|1|A|A|1502
5K0Y|1|A|G|1503
5K0Y|1|A|A|1504
5K0Y|1|A|U|1505
5K0Y|1|A|G|1506
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain J
- ribosomal protein uS14
- Chain p
- ribosomal protein eS31
- Chain r
- 40S ribosomal protein S12
- Chain t
- ribosomal protein eS10
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