J3_5K0Y_016
3D structure
- PDB id
- 5K0Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- m48S late-stage initiation complex, purified from rabbit reticulocytes lysates, displaying eIF2 ternary complex and eIF3 i and g subunits relocated to the intersubunit face
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.8 Å
Loop
- Sequence
- UGG*UAAGAG*CAUUA
- Length
- 14 nucleotides
- Bulged bases
- 5K0Y|1|A|G|917
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5K0Y_016 not in the Motif Atlas
- Homologous match to J3_8C3A_034
- Geometric discrepancy: 0.2803
- The information below is about J3_8C3A_034
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17385.2
- Basepair signature
- cWW-tSH-cWW-tHW-cWW-cWW-F
- Number of instances in this motif group
- 7
Unit IDs
5K0Y|1|A|U|672
5K0Y|1|A|G|673
5K0Y|1|A|G|674
*
5K0Y|1|A|U|914
5K0Y|1|A|A|915
5K0Y|1|A|A|916
5K0Y|1|A|G|917
5K0Y|1|A|A|918
5K0Y|1|A|G|919
*
5K0Y|1|A|C|1015
5K0Y|1|A|A|1016
5K0Y|1|A|U|1017
5K0Y|1|A|U|1018
5K0Y|1|A|A|1019
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain G
- ribosomal protein uS17
- Chain Q
- ribosomal protein uS12
- Chain X
- ribosomal protein eS7
- Chain Y
- 40S ribosomal protein S27
- Chain Z
- ribosomal protein uS15
- Chain a
- ribosomal protein uS8
Coloring options: