J3_5KCR_024
3D structure
- PDB id
- 5KCR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Escherichia coli 70S ribosome in complex with antibiotic Avilamycin C, mRNA and P-site tRNA at 3.6A resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- CAAUG*CGUAGUCC*GUCG
- Length
- 17 nucleotides
- Bulged bases
- 5KCR|1|1a|U|1240
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5KCR_024 not in the Motif Atlas
- Homologous match to J3_5J7L_011
- Geometric discrepancy: 0.1574
- The information below is about J3_5J7L_011
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_37047.6
- Basepair signature
- cWW-cSS-tHW-F-F-F-cWW-cWW-F-cSH-F-F
- Number of instances in this motif group
- 4
Unit IDs
5KCR|1|1a|C|1237
5KCR|1|1a|A|1238
5KCR|1|1a|A|1239
5KCR|1|1a|U|1240
5KCR|1|1a|G|1241
*
5KCR|1|1a|C|1296
5KCR|1|1a|G|1297
5KCR|1|1a|U|1298
5KCR|1|1a|A|1299
5KCR|1|1a|G|1300
5KCR|1|1a|U|1301
5KCR|1|1a|C|1302
5KCR|1|1a|C|1303
*
5KCR|1|1a|G|1334
5KCR|1|1a|U|1335
5KCR|1|1a|C|1336
5KCR|1|1a|G|1337
Current chains
- Chain 1a
- 16S Ribosomal RNA
Nearby chains
- Chain 1g
- 30S ribosomal protein S7
- Chain 1m
- 30S ribosomal protein S13
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