J3_5KPS_004

3D structure

PDB id

5KPS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to ribosome in absence of A/R tRNA (Structure I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CUUG*CGGAG*CGUUAAG

Length

16 nucleotides

Bulged bases

5KPS|1|27|U|871

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5KPS_004 not in the Motif Atlas

Homologous match to J3_5J7L_004

Geometric discrepancy: 0.0837

The information below is about J3_5J7L_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85054.4

Basepair signature

cWW-tWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

3

Unit IDs

5KPS|1|27|C|826
5KPS|1|27|U|827
5KPS|1|27|U|828
5KPS|1|27|G|829
*
5KPS|1|27|C|857
5KPS|1|27|G|858
5KPS|1|27|G|859
5KPS|1|27|A|860
5KPS|1|27|G|861
*
5KPS|1|27|C|868
5KPS|1|27|G|869
5KPS|1|27|U|870
5KPS|1|27|U|871
5KPS|1|27|A|872
5KPS|1|27|A|873
5KPS|1|27|G|874

Current chains

Chain 27

16S ribosomal RNA

Nearby chains

Chain 13

30S ribosomal protein S8

Chain 26

30S ribosomal protein S21

Chain 7

30S ribosomal protein S2