J3_5KPS_013

3D structure

PDB id

5KPS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to ribosome in absence of A/R tRNA (Structure I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CAAUG*CGUAGUCC*GUCG

Length

17 nucleotides

Bulged bases

5KPS|1|27|U|1240

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5KPS_013 not in the Motif Atlas

Homologous match to J3_4LFB_009

Geometric discrepancy: 0.1679

The information below is about J3_4LFB_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_37047.6

Basepair signature

cWW-cSS-tHW-F-F-F-cWW-cWW-F-cSH-F-F

Number of instances in this motif group

4

Unit IDs

5KPS|1|27|C|1237
5KPS|1|27|A|1238
5KPS|1|27|A|1239
5KPS|1|27|U|1240
5KPS|1|27|G|1241
*
5KPS|1|27|C|1296
5KPS|1|27|G|1297
5KPS|1|27|U|1298
5KPS|1|27|A|1299
5KPS|1|27|G|1300
5KPS|1|27|U|1301
5KPS|1|27|C|1302
5KPS|1|27|C|1303
*
5KPS|1|27|G|1334
5KPS|1|27|U|1335
5KPS|1|27|C|1336
5KPS|1|27|G|1337

Current chains

Chain 27

16S ribosomal RNA

Nearby chains

Chain 12

30S ribosomal protein S7

Chain 18

30S ribosomal protein S13

Chain 32

Transfer RNA; tRNA