J3_5KPS_019

3D structure

PDB id

5KPS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to ribosome in absence of A/R tRNA (Structure I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CGGAAG*CAG*CAAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5KPS_019 not in the Motif Atlas

Homologous match to J3_5J7L_041

Geometric discrepancy: 0.1109

The information below is about J3_5J7L_041

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32852.6

Basepair signature

cWW-tSH-F-F-F-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

5KPS|1|28|C|1298
5KPS|1|28|G|1299
5KPS|1|28|G|1300
5KPS|1|28|A|1301
5KPS|1|28|A|1302
5KPS|1|28|G|1303
*
5KPS|1|28|C|1625
5KPS|1|28|A|1626
5KPS|1|28|G|1627
*
5KPS|1|28|C|1639
5KPS|1|28|A|1640
5KPS|1|28|A|1641
5KPS|1|28|G|1642

Current chains

Chain 28

23S ribosomal RNA

Nearby chains