J3_5KPS_020

3D structure

PDB id

5KPS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to ribosome in absence of A/R tRNA (Structure I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CAAG*CCCAAAC*GUG

Length

14 nucleotides

Bulged bases

5KPS|1|28|A|1609

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5KPS_020 not in the Motif Atlas

Homologous match to J3_7A0S_007

Geometric discrepancy: 0.1313

The information below is about J3_7A0S_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_47341.1

Basepair signature

cWW-tHH-F-tHW-tHS-tWW-cWW-cWW-F

Number of instances in this motif group

4

Unit IDs

5KPS|1|28|C|1306
5KPS|1|28|A|1307
5KPS|1|28|A|1308
5KPS|1|28|G|1309
*
5KPS|1|28|C|1605
5KPS|1|28|C|1606
5KPS|1|28|C|1607
5KPS|1|28|A|1608
5KPS|1|28|A|1609
5KPS|1|28|A|1610
5KPS|1|28|C|1611
*
5KPS|1|28|G|1620
5KPS|1|28|U|1621
5KPS|1|28|G|1622

Current chains

Chain 28

23S ribosomal RNA

Nearby chains

Chain 4

50S ribosomal protein L34