J3_5KPS_028

3D structure

PDB id

5KPS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to ribosome in absence of A/R tRNA (Structure I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GCCUAAC*GGGGAAUAU*AGC

Length

19 nucleotides

Bulged bases

5KPS|1|27|C|48, 5KPS|1|27|A|50, 5KPS|1|27|A|51

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5KPS_028 not in the Motif Atlas

Homologous match to J3_5J7L_050

Geometric discrepancy: 0.101

The information below is about J3_5J7L_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46317.4

Basepair signature

cWW-cWW-cSW-F-cWW-F-F-F-F-cWW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

5KPS|1|27|G|46
5KPS|1|27|C|47
5KPS|1|27|C|48
5KPS|1|27|U|49
5KPS|1|27|A|50
5KPS|1|27|A|51
5KPS|1|27|C|52
*
5KPS|1|27|G|359
5KPS|1|27|G|360
5KPS|1|27|G|361
5KPS|1|27|G|362
5KPS|1|27|A|363
5KPS|1|27|A|364
5KPS|1|27|U|365
5KPS|1|27|A|366
5KPS|1|27|U|367
*
5KPS|1|27|A|393
5KPS|1|27|G|394
5KPS|1|27|C|395

Current chains

Chain 27

16S ribosomal RNA

Nearby chains

Chain 17

30S ribosomal protein S12

Chain 21

30S ribosomal protein S16