J3_5L3P_005

3D structure

PDB id

5L3P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of stringent response factor RelA bound to ErmCL-stalled ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CGGAAG*CAG*CAAG

Length

13 nucleotides

Bulged bases

5L3P|1|A|A|1302

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5L3P_005 not in the Motif Atlas

Homologous match to J3_5J7L_041

Geometric discrepancy: 0.1825

The information below is about J3_5J7L_041

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32852.6

Basepair signature

cWW-tSH-F-F-F-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

5L3P|1|A|C|1298
5L3P|1|A|G|1299
5L3P|1|A|G|1300
5L3P|1|A|A|1301
5L3P|1|A|A|1302
5L3P|1|A|G|1303
*
5L3P|1|A|C|1625
5L3P|1|A|A|1626
5L3P|1|A|G|1627
*
5L3P|1|A|C|1639
5L3P|1|A|A|1640
5L3P|1|A|A|1641
5L3P|1|A|G|1642

Current chains

Chain A

23S ribosomal RNA

Nearby chains