J3_5LKS_007

3D structure

PDB id

5LKS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure-function insights reveal the human ribosome as a cancer target for antibiotics

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GAAG*CCAUAUC*GUC

Length

14 nucleotides

Bulged bases

5LKS|1|L5|U|2788, 5LKS|1|L5|A|2789

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5LKS_007 not in the Motif Atlas

Homologous match to J3_8C3A_007

Geometric discrepancy: 0.1758

The information below is about J3_8C3A_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_74051.1

Basepair signature

cWW-tSH-tWW-tHW-F-F-cWW-cWW

Number of instances in this motif group

3

Unit IDs

5LKS|1|L5|G|2402
5LKS|1|L5|A|2403
5LKS|1|L5|A|2404
5LKS|1|L5|G|2405
*
5LKS|1|L5|C|2785
5LKS|1|L5|C|2786
5LKS|1|L5|A|2787
5LKS|1|L5|U|2788
5LKS|1|L5|A|2789
5LKS|1|L5|U|2790
5LKS|1|L5|C|2791
*
5LKS|1|L5|G|2800
5LKS|1|L5|U|2801
5LKS|1|L5|C|2802

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain Lg

60S ribosomal protein L34

Chain Lj

60S ribosomal protein L37

Chain Ll

60S ribosomal protein L39