J3_5LKS_026

3D structure

PDB id

5LKS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure-function insights reveal the human ribosome as a cancer target for antibiotics

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CGAAGUGG*CCAA*UCUG

Length

16 nucleotides

Bulged bases

5LKS|1|L5|A|2396, 5LKS|1|L5|C|2805

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5LKS_026 not in the Motif Atlas

Homologous match to J3_8P9A_053

Geometric discrepancy: 0.5163

The information below is about J3_8P9A_053

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_05025.1

Basepair signature

cWW-tSH-tWW-tHW-cWW-F-cWW-F

Number of instances in this motif group

4

Unit IDs

5LKS|1|L5|C|2393
5LKS|1|L5|G|2394
5LKS|1|L5|A|2395
5LKS|1|L5|A|2396
5LKS|1|L5|G|2397
5LKS|1|L5|U|2398
5LKS|1|L5|G|2399
5LKS|1|L5|G|2400
*
5LKS|1|L5|C|2804
5LKS|1|L5|C|2805
5LKS|1|L5|A|2806
5LKS|1|L5|A|2807
*
5LKS|1|L5|U|2819
5LKS|1|L5|C|2820
5LKS|1|L5|U|2821
5LKS|1|L5|G|2822

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LR

60S ribosomal protein L19

Chain Lg

60S ribosomal protein L34