J3_5LMV_004

3D structure

PDB id

5LMV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of bacterial 30S-IF1-IF2-IF3-mRNA-tRNA translation pre-initiation complex(state-III)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.9 Å

Loop

Sequence

CUAG*CGAAG*CGUUAAG

Length

16 nucleotides

Bulged bases

5LMV|1|A|U|871

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5LMV_004 not in the Motif Atlas

Homologous match to J3_6CZR_018

Geometric discrepancy: 0.145

The information below is about J3_6CZR_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85054.3

Basepair signature

cWW-tSH-F-tWW-tHS-cWW-cWW-F

Number of instances in this motif group

4

Unit IDs

5LMV|1|A|C|826
5LMV|1|A|U|827
5LMV|1|A|A|828
5LMV|1|A|G|829
*
5LMV|1|A|C|857
5LMV|1|A|G|858
5LMV|1|A|A|859
5LMV|1|A|A|860
5LMV|1|A|G|861
*
5LMV|1|A|C|868
5LMV|1|A|G|869
5LMV|1|A|U|870
5LMV|1|A|U|871
5LMV|1|A|A|872
5LMV|1|A|A|873
5LMV|1|A|G|874

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain B

30S ribosomal protein S2

Chain H

30S ribosomal protein S8