J3_5LZE_013
3D structure
- PDB id
- 5LZE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the 70S ribosome with Sec-tRNASec in the classical pre-translocation state (C)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- GCCGUAG*CGC*GGAAC
- Length
- 15 nucleotides
- Bulged bases
- 5LZE|1|B|U|14, 5LZE|1|B|A|108
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5LZE_013 not in the Motif Atlas
- Homologous match to J3_7A0S_014
- Geometric discrepancy: 0.3466
- The information below is about J3_7A0S_014
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_13944.1
- Basepair signature
- cWW-F-F-tSS-F-F-cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
5LZE|1|B|G|10
5LZE|1|B|C|11
5LZE|1|B|C|12
5LZE|1|B|G|13
5LZE|1|B|U|14
5LZE|1|B|A|15
5LZE|1|B|G|16
*
5LZE|1|B|C|68
5LZE|1|B|G|69
5LZE|1|B|C|70
*
5LZE|1|B|G|106
5LZE|1|B|G|107
5LZE|1|B|A|108
5LZE|1|B|A|109
5LZE|1|B|C|110
Current chains
- Chain B
- 5S ribosomal RNA
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain O
- 50S ribosomal protein L18
- Chain V
- 50S ribosomal protein L25
- Chain W
- 50S ribosomal protein L27
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