3D structure

PDB id
5LZE (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the 70S ribosome with Sec-tRNASec in the classical pre-translocation state (C)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.5 Å

Loop

Sequence
CUUG*CGGAG*CGUUAAG
Length
16 nucleotides
Bulged bases
5LZE|1|a|U|871
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_5LZE_016 not in the Motif Atlas
Homologous match to J3_5J7L_004
Geometric discrepancy: 0.0865
The information below is about J3_5J7L_004
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_85054.4
Basepair signature
cWW-tWW-tHS-F-cWW-tHS-cWW-F
Number of instances in this motif group
3

Unit IDs

5LZE|1|a|C|826
5LZE|1|a|U|827
5LZE|1|a|U|828
5LZE|1|a|G|829
*
5LZE|1|a|C|857
5LZE|1|a|G|858
5LZE|1|a|G|859
5LZE|1|a|A|860
5LZE|1|a|G|861
*
5LZE|1|a|C|868
5LZE|1|a|G|869
5LZE|1|a|U|870
5LZE|1|a|U|871
5LZE|1|a|A|872
5LZE|1|a|A|873
5LZE|1|a|G|874

Current chains

Chain a
16S ribosomal RNA

Nearby chains

Chain b
30S ribosomal protein S2
Chain h
30S ribosomal protein S8
Chain u
30S ribosomal protein S21

Coloring options:


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