J3_5LZY_009
3D structure
- PDB id
- 5LZY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a polyadenylated mRNA.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.99 Å
Loop
- Sequence
- GAAG*CCAUAUC*GUC
- Length
- 14 nucleotides
- Bulged bases
- 5LZY|1|5|U|2788, 5LZY|1|5|A|2789
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5LZY_009 not in the Motif Atlas
- Homologous match to J3_8C3A_007
- Geometric discrepancy: 0.2762
- The information below is about J3_8C3A_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_74051.1
- Basepair signature
- cWW-tSH-tWW-tHW-F-F-cWW-cWW
- Number of instances in this motif group
- 3
Unit IDs
5LZY|1|5|G|2402
5LZY|1|5|A|2403
5LZY|1|5|A|2404
5LZY|1|5|G|2405
*
5LZY|1|5|C|2785
5LZY|1|5|C|2786
5LZY|1|5|A|2787
5LZY|1|5|U|2788
5LZY|1|5|A|2789
5LZY|1|5|U|2790
5LZY|1|5|C|2791
*
5LZY|1|5|G|2800
5LZY|1|5|U|2801
5LZY|1|5|C|2802
Current chains
- Chain 5
- 28S ribosomal RNA
Nearby chains
- Chain g
- eL34
- Chain j
- eL37
- Chain l
- eL39
Coloring options: