J3_5LZY_014
3D structure
- PDB id
- 5LZY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a polyadenylated mRNA.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.99 Å
Loop
- Sequence
- GGGG*CGCUUCUGGCGCCAAG*CGAC
- Length
- 24 nucleotides
- Bulged bases
- 5LZY|1|5|C|4116, 5LZY|1|5|U|4117, 5LZY|1|5|U|4118, 5LZY|1|5|C|4119, 5LZY|1|5|U|4120, 5LZY|1|5|G|4121
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5LZY_014 not in the Motif Atlas
- Homologous match to J3_8P9A_060
- Geometric discrepancy: 0.2557
- The information below is about J3_8P9A_060
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_76247.1
- Basepair signature
- cWW-F-tHH-F-tHS-cWW-cWW-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
5LZY|1|5|G|4091
5LZY|1|5|G|4092
5LZY|1|5|G|4093
5LZY|1|5|G|4094
*
5LZY|1|5|C|4114
5LZY|1|5|G|4115
5LZY|1|5|C|4116
5LZY|1|5|U|4117
5LZY|1|5|U|4118
5LZY|1|5|C|4119
5LZY|1|5|U|4120
5LZY|1|5|G|4121
5LZY|1|5|G|4122
5LZY|1|5|C|4123
5LZY|1|5|G|4124
5LZY|1|5|C|4125
5LZY|1|5|C|4126
5LZY|1|5|A|4127
5LZY|1|5|A|4128
5LZY|1|5|G|4129
*
5LZY|1|5|C|4155
5LZY|1|5|G|4156
5LZY|1|5|A|4157
5LZY|1|5|C|4158
Current chains
- Chain 5
- 28S ribosomal RNA
Nearby chains
- Chain A
- uL2
- Chain G
- eL8
- Chain Z
- 60S ribosomal protein L27
- Chain c
- eL30
- Chain g
- eL34
- Chain p
- eL43
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