J3_5LZY_019
3D structure
- PDB id
- 5LZY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a polyadenylated mRNA.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.99 Å
Loop
- Sequence
- AC*GAGAAUU*ACACU
- Length
- 14 nucleotides
- Bulged bases
- 5LZY|1|8|A|62, 5LZY|1|8|U|63
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5LZY_019 not in the Motif Atlas
- Homologous match to J3_8C3A_060
- Geometric discrepancy: 0.1789
- The information below is about J3_8C3A_060
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_38265.2
- Basepair signature
- cWW-F-cWW-F-cWW-F-cWW-F
- Number of instances in this motif group
- 8
Unit IDs
5LZY|1|8|A|44
5LZY|1|8|C|45
*
5LZY|1|8|G|58
5LZY|1|8|A|59
5LZY|1|8|G|60
5LZY|1|8|A|61
5LZY|1|8|A|62
5LZY|1|8|U|63
5LZY|1|8|U|64
*
5LZY|1|8|A|95
5LZY|1|8|C|96
5LZY|1|8|A|97
5LZY|1|8|C|98
5LZY|1|8|U|99
Current chains
- Chain 8
- 5.8S ribosomal RNA
Nearby chains
- Chain 5
- Large subunit ribosomal RNA; LSU rRNA
- Chain X
- eL23
- Chain h
- uL29
- Chain j
- eL37
- Chain l
- eL39
Coloring options: