J3_5LZY_022

3D structure

PDB id

5LZY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a polyadenylated mRNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.99 Å

Loop

Sequence

AGAG*CAG*CUGGAU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5LZY_022 not in the Motif Atlas

Homologous match to J3_4V88_032

Geometric discrepancy: 0.2099

The information below is about J3_4V88_032

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_54972.1

Basepair signature

cWW-tWW-F-cWW-F-tHS-F-cWW

Number of instances in this motif group

2

Unit IDs

5LZY|1|9|A|816
5LZY|1|9|G|817
5LZY|1|9|A|818
5LZY|1|9|G|819
*
5LZY|1|9|C|829
5LZY|1|9|A|830
5LZY|1|9|G|831
*
5LZY|1|9|C|843
5LZY|1|9|U|844
5LZY|1|9|G|845
5LZY|1|9|G|846
5LZY|1|9|A|847
5LZY|1|9|U|848

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain EE

eS4

Chain JJ

Ribosomal protein S9 (Predicted)

Chain YY

eS24