J3_5LZY_028

3D structure

PDB id

5LZY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a polyadenylated mRNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.99 Å

Loop

Sequence

CCGGAC*GGGUG*UUAGAUG

Length

18 nucleotides

Bulged bases

5LZY|1|9|G|1507, 5LZY|1|9|U|1509

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5LZY_028 not in the Motif Atlas

Homologous match to J3_4V88_038

Geometric discrepancy: 0.1219

The information below is about J3_4V88_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_75993.1

Basepair signature

cWW-tWH-F-F-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

2

Unit IDs

5LZY|1|9|C|1272
5LZY|1|9|C|1273
5LZY|1|9|G|1274
5LZY|1|9|G|1275
5LZY|1|9|A|1276
5LZY|1|9|C|1277
*
5LZY|1|9|G|1320
5LZY|1|9|G|1321
5LZY|1|9|G|1322
5LZY|1|9|U|1323
5LZY|1|9|G|1324
*
5LZY|1|9|U|1504
5LZY|1|9|U|1505
5LZY|1|9|A|1506
5LZY|1|9|G|1507
5LZY|1|9|A|1508
5LZY|1|9|U|1509
5LZY|1|9|G|1510

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain KK

eS10

Chain dd

uS14

Chain ff

eS31