J3_5M1J_004

3D structure

PDB id

5M1J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nonstop ribosomal complex bound with Dom34 and Hbs1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UGAACUA*UAG*CGAA

Length

14 nucleotides

Bulged bases

5M1J|1|14|A|817, 5M1J|1|14|G|924

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5M1J_004 not in the Motif Atlas

Homologous match to J3_8C3A_003

Geometric discrepancy: 0.1178

The information below is about J3_8C3A_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_39238.5

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

5M1J|1|14|U|814
5M1J|1|14|G|815
5M1J|1|14|A|816
5M1J|1|14|A|817
5M1J|1|14|C|818
5M1J|1|14|U|819
5M1J|1|14|A|820
*
5M1J|1|14|U|905
5M1J|1|14|A|906
5M1J|1|14|G|907
*
5M1J|1|14|C|923
5M1J|1|14|G|924
5M1J|1|14|A|925
5M1J|1|14|A|926

Current chains

Chain 14

25S ribosomal RNA

Nearby chains

Chain A5

60S ribosomal protein L2-A

Chain N5

60S ribosomal protein L15-A

Chain j5

60S ribosomal protein L37-A