J3_5M1J_015
3D structure
- PDB id
- 5M1J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Nonstop ribosomal complex bound with Dom34 and Hbs1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- UAUC*GUUG*CACUAAUA
- Length
- 16 nucleotides
- Bulged bases
- 5M1J|1|14|A|2887, 5M1J|1|14|U|2888
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5M1J_015 not in the Motif Atlas
- Geometric match to J3_4V9F_009
- Geometric discrepancy: 0.2931
- The information below is about J3_4V9F_009
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_68010.1
- Basepair signature
- cWW-cWH-cWW-cSS-tWH-tSS-F-cWW-F-cWW
- Number of instances in this motif group
- 2
Unit IDs
5M1J|1|14|U|2886
5M1J|1|14|A|2887
5M1J|1|14|U|2888
5M1J|1|14|C|2889
*
5M1J|1|14|G|2914
5M1J|1|14|U|2915
5M1J|1|14|U|2916
5M1J|1|14|G|2917
*
5M1J|1|14|C|2929
5M1J|1|14|A|2930
5M1J|1|14|C|2931
5M1J|1|14|U|2932
5M1J|1|14|A|2933
5M1J|1|14|A|2934
5M1J|1|14|U|2935
5M1J|1|14|A|2936
Current chains
- Chain 14
- 25S ribosomal RNA
Nearby chains
- Chain A1
- Protein DOM34
- Chain B5
- 60S ribosomal protein L3
- Chain K5
- 60S ribosomal protein L16-A
- Chain V5
- 60S ribosomal protein L23-A
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