J3_5M1J_022

3D structure

PDB id

5M1J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nonstop ribosomal complex bound with Dom34 and Hbs1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CCAG*CUAGUAA*UGAUUACG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5M1J_022 not in the Motif Atlas

Homologous match to J3_4V88_035

Geometric discrepancy: 0.1425

The information below is about J3_4V88_035

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_25303.1

Basepair signature

cWW-tSH-tHW-cSH-cSS-tHH-cSS-tWW-F-tHS-cWW-cWW

Number of instances in this motif group

5

Unit IDs

5M1J|1|22|C|1161
5M1J|1|22|C|1162
5M1J|1|22|A|1163
5M1J|1|22|G|1164
*
5M1J|1|22|C|1581
5M1J|1|22|U|1582
5M1J|1|22|A|1583
5M1J|1|22|G|1584
5M1J|1|22|U|1585
5M1J|1|22|A|1586
5M1J|1|22|A|1587
*
5M1J|1|22|U|1609
5M1J|1|22|G|1610
5M1J|1|22|A|1611
5M1J|1|22|U|1612
5M1J|1|22|U|1613
5M1J|1|22|A|1614
5M1J|1|22|C|1615
5M1J|1|22|G|1616

Current chains

Chain 22

18S ribosomal RNA

Nearby chains

Chain F2

40S ribosomal protein S5

Chain Q2

40S ribosomal protein S16-A

Chain c2

40S ribosomal protein S28-B