J3_5M1J_025
3D structure
- PDB id
- 5M1J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Nonstop ribosomal complex bound with Dom34 and Hbs1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- CCAGAC*GGGUG*UUAGACG
- Length
- 18 nucleotides
- Bulged bases
- 5M1J|1|22|A|1217, 5M1J|1|22|G|1445, 5M1J|1|22|C|1447
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5M1J_025 not in the Motif Atlas
- Homologous match to J3_4V88_038
- Geometric discrepancy: 0.1164
- The information below is about J3_4V88_038
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_75993.1
- Basepair signature
- cWW-tWH-F-F-tHS-cWW-cWW-cWW-F
- Number of instances in this motif group
- 2
Unit IDs
5M1J|1|22|C|1215
5M1J|1|22|C|1216
5M1J|1|22|A|1217
5M1J|1|22|G|1218
5M1J|1|22|A|1219
5M1J|1|22|C|1220
*
5M1J|1|22|G|1263
5M1J|1|22|G|1264
5M1J|1|22|G|1265
5M1J|1|22|U|1266
5M1J|1|22|G|1267
*
5M1J|1|22|U|1442
5M1J|1|22|U|1443
5M1J|1|22|A|1444
5M1J|1|22|G|1445
5M1J|1|22|A|1446
5M1J|1|22|C|1447
5M1J|1|22|G|1448
Current chains
- Chain 22
- 18S ribosomal RNA
Nearby chains
- Chain A1
- Protein DOM34
- Chain K2
- 40S ribosomal protein S10-A
- Chain d2
- 40S ribosomal protein S29-A
- Chain f2
- Ubiquitin-40S ribosomal protein S31
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