J3_5M1J_046
3D structure
- PDB id
- 5M1J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Nonstop ribosomal complex bound with Dom34 and Hbs1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- UGA*UAAUAG*CAUUA
- Length
- 14 nucleotides
- Bulged bases
- 5M1J|1|22|U|864
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5M1J_046 not in the Motif Atlas
- Homologous match to J3_8C3A_034
- Geometric discrepancy: 0.2042
- The information below is about J3_8C3A_034
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17385.2
- Basepair signature
- cWW-tSH-cWW-tHW-cWW-cWW-F
- Number of instances in this motif group
- 7
Unit IDs
5M1J|1|22|U|633
5M1J|1|22|G|634
5M1J|1|22|A|635
*
5M1J|1|22|U|861
5M1J|1|22|A|862
5M1J|1|22|A|863
5M1J|1|22|U|864
5M1J|1|22|A|865
5M1J|1|22|G|866
*
5M1J|1|22|C|962
5M1J|1|22|A|963
5M1J|1|22|U|964
5M1J|1|22|U|965
5M1J|1|22|A|966
Current chains
- Chain 22
- 18S ribosomal RNA
Nearby chains
- Chain H2
- 40S ribosomal protein S7-A
- Chain L2
- 40S ribosomal protein S11-A
- Chain N2
- 40S ribosomal protein S13
- Chain W2
- 40S ribosomal protein S22-A
- Chain X2
- 40S ribosomal protein S23-A
- Chain b2
- 40S ribosomal protein S27-A
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