J3_5MC6_005

3D structure

PDB id

5MC6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a native ribosome-Ski2-Ski3-Ski8 complex from S. cerevisiae

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CCAG*CUAGUAA*UGAUUACG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5MC6_005 not in the Motif Atlas

Homologous match to J3_4V88_035

Geometric discrepancy: 0.1999

The information below is about J3_4V88_035

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_25303.1

Basepair signature

cWW-tSH-tHW-cSH-cSS-tHH-cSS-tWW-F-tHS-cWW-cWW

Number of instances in this motif group

5

Unit IDs

5MC6|1|2|C|1161
5MC6|1|2|C|1162
5MC6|1|2|A|1163
5MC6|1|2|G|1164
*
5MC6|1|2|C|1581
5MC6|1|2|U|1582
5MC6|1|2|A|1583
5MC6|1|2|G|1584
5MC6|1|2|U|1585
5MC6|1|2|A|1586
5MC6|1|2|A|1587
*
5MC6|1|2|U|1609
5MC6|1|2|G|1610
5MC6|1|2|A|1611
5MC6|1|2|U|1612
5MC6|1|2|U|1613
5MC6|1|2|A|1614
5MC6|1|2|C|1615
5MC6|1|2|G|1616

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain B

40S ribosomal protein S5

Chain F

40S ribosomal protein S16-A

Chain L

40S ribosomal protein S28-B