J3_5MC6_008

3D structure

PDB id

5MC6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a native ribosome-Ski2-Ski3-Ski8 complex from S. cerevisiae

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CCAGAC*GGGUG*UUAGACG

Length

18 nucleotides

Bulged bases

5MC6|1|2|A|1217, 5MC6|1|2|G|1445

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5MC6_008 not in the Motif Atlas

Homologous match to J3_4V88_038

Geometric discrepancy: 0.175

The information below is about J3_4V88_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_75993.1

Basepair signature

cWW-tWH-F-F-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

2

Unit IDs

5MC6|1|2|C|1215
5MC6|1|2|C|1216
5MC6|1|2|A|1217
5MC6|1|2|G|1218
5MC6|1|2|A|1219
5MC6|1|2|C|1220
*
5MC6|1|2|G|1263
5MC6|1|2|G|1264
5MC6|1|2|G|1265
5MC6|1|2|U|1266
5MC6|1|2|G|1267
*
5MC6|1|2|U|1442
5MC6|1|2|U|1443
5MC6|1|2|A|1444
5MC6|1|2|G|1445
5MC6|1|2|A|1446
5MC6|1|2|C|1447
5MC6|1|2|G|1448

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain C

40S ribosomal protein S10-A

Chain M

40S ribosomal protein S29-A