J3_5MC6_016

3D structure

PDB id

5MC6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a native ribosome-Ski2-Ski3-Ski8 complex from S. cerevisiae

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UGAACUA*UAG*CGAA

Length

14 nucleotides

Bulged bases

5MC6|1|BQ|A|817, 5MC6|1|BQ|G|924, 5MC6|1|BQ|A|925

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5MC6_016 not in the Motif Atlas

Homologous match to J3_5TBW_004

Geometric discrepancy: 0.1396

The information below is about J3_5TBW_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_39238.5

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

5MC6|1|BQ|U|814
5MC6|1|BQ|G|815
5MC6|1|BQ|A|816
5MC6|1|BQ|A|817
5MC6|1|BQ|C|818
5MC6|1|BQ|U|819
5MC6|1|BQ|A|820
*
5MC6|1|BQ|U|905
5MC6|1|BQ|A|906
5MC6|1|BQ|G|907
*
5MC6|1|BQ|C|923
5MC6|1|BQ|G|924
5MC6|1|BQ|A|925
5MC6|1|BQ|A|926

Current chains

Chain BQ

25S ribosomal RNA

Nearby chains

Chain AF

60S ribosomal protein L37-A

Chain AQ

60S ribosomal protein L15-A

Chain AW

60S ribosomal protein L2-A