J3_5MC6_020

3D structure

PDB id

5MC6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a native ribosome-Ski2-Ski3-Ski8 complex from S. cerevisiae

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UGAAGUG*CAA*UCUA

Length

14 nucleotides

Bulged bases

5MC6|1|BQ|A|1482

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5MC6_020 not in the Motif Atlas

Homologous match to J3_5TBW_008

Geometric discrepancy: 0.1166

The information below is about J3_5TBW_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_10154.2

Basepair signature

cWW-tWW-tHW-cWW-tSH-cWW-cWW-F-F

Number of instances in this motif group

3

Unit IDs

5MC6|1|BQ|U|1479
5MC6|1|BQ|G|1480
5MC6|1|BQ|A|1481
5MC6|1|BQ|A|1482
5MC6|1|BQ|G|1483
5MC6|1|BQ|U|1484
5MC6|1|BQ|G|1485
*
5MC6|1|BQ|C|1857
5MC6|1|BQ|A|1858
5MC6|1|BQ|A|1859
*
5MC6|1|BQ|U|1871
5MC6|1|BQ|C|1872
5MC6|1|BQ|U|1873
5MC6|1|BQ|A|1874

Current chains

Chain BQ

25S ribosomal RNA

Nearby chains

Chain BF

60S ribosomal protein L19-A

Chain BN

60S ribosomal protein L34-A