J3_5MC6_027

3D structure

PDB id

5MC6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a native ribosome-Ski2-Ski3-Ski8 complex from S. cerevisiae

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UAUC*GUU*ACUAAUA

Length

14 nucleotides

Bulged bases

5MC6|1|BQ|A|2887, 5MC6|1|BQ|U|2888

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5MC6_027 not in the Motif Atlas

Homologous match to J3_5TBW_014

Geometric discrepancy: 0.1015

The information below is about J3_5TBW_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_98597.1

Basepair signature

cWW-tWW-cHW-tSH-cWW-tSS-F-cSS-cWW

Number of instances in this motif group

2

Unit IDs

5MC6|1|BQ|U|2886
5MC6|1|BQ|A|2887
5MC6|1|BQ|U|2888
5MC6|1|BQ|C|2889
*
5MC6|1|BQ|G|2914
5MC6|1|BQ|U|2915
5MC6|1|BQ|U|2916
*
5MC6|1|BQ|A|2930
5MC6|1|BQ|C|2931
5MC6|1|BQ|U|2932
5MC6|1|BQ|A|2933
5MC6|1|BQ|A|2934
5MC6|1|BQ|U|2935
5MC6|1|BQ|A|2936

Current chains

Chain BQ

25S ribosomal RNA

Nearby chains

Chain AB

60S ribosomal protein L23-A

Chain AU

60S ribosomal protein L16-A

Chain BA

60S ribosomal protein L3