J3_5MC6_029

3D structure

PDB id

5MC6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a native ribosome-Ski2-Ski3-Ski8 complex from S. cerevisiae

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CCAUAU*AG*UG

Length

10 nucleotides

Bulged bases

5MC6|1|BR|U|12

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5MC6_029 not in the Motif Atlas

Homologous match to J3_5TBW_045

Geometric discrepancy: 0.1294

The information below is about J3_5TBW_045

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_52398.1

Basepair signature

cWW-F-cWW-tSS-F-cWW

Number of instances in this motif group

4

Unit IDs

5MC6|1|BR|C|9
5MC6|1|BR|C|10
5MC6|1|BR|A|11
5MC6|1|BR|U|12
5MC6|1|BR|A|13
5MC6|1|BR|U|14
*
5MC6|1|BR|A|66
5MC6|1|BR|G|67
*
5MC6|1|BR|U|111
5MC6|1|BR|G|112

Current chains

Chain BR

5S ribosomal RNA

Nearby chains

Chain BD

60S ribosomal protein L10

Chain BI

60S ribosomal protein L5

Chain BJ

60S ribosomal protein L21-A

Chain BQ

Large subunit ribosomal RNA; LSU rRNA