J3_5MEI_038
3D structure
- PDB id
- 5MEI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of Agelastatin A bound to the 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.5 Å
Loop
- Sequence
- CCAGAC*GGGUG*UUAGACG
- Length
- 18 nucleotides
- Bulged bases
- 5MEI|1|A|A|1217, 5MEI|1|A|G|1445, 5MEI|1|A|C|1447
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5MEI_038 not in the Motif Atlas
- Homologous match to J3_8C3A_041
- Geometric discrepancy: 0.1297
- The information below is about J3_8C3A_041
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_23728.1
- Basepair signature
- cWW-tWH-F-F-tHS-cWW-cWW-cWW-F
- Number of instances in this motif group
- 2
Unit IDs
5MEI|1|A|C|1215
5MEI|1|A|C|1216
5MEI|1|A|A|1217
5MEI|1|A|G|1218
5MEI|1|A|A|1219
5MEI|1|A|C|1220
*
5MEI|1|A|G|1263
5MEI|1|A|G|1264
5MEI|1|A|G|1265
5MEI|1|A|U|1266
5MEI|1|A|G|1267
*
5MEI|1|A|U|1442
5MEI|1|A|U|1443
5MEI|1|A|A|1444
5MEI|1|A|G|1445
5MEI|1|A|A|1446
5MEI|1|A|C|1447
5MEI|1|A|G|1448
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain L
- 40S ribosomal protein S10-A
- Chain e
- 40S ribosomal protein S29-A
- Chain g
- Ubiquitin-40S ribosomal protein S31
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