J3_5MEI_042
3D structure
- PDB id
- 5MEI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of Agelastatin A bound to the 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.5 Å
Loop
- Sequence
- CACUG*CGUGCUGG*CGAG
- Length
- 17 nucleotides
- Bulged bases
- 5MEI|1|A|U|1473, 5MEI|1|A|G|1539
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5MEI_042 not in the Motif Atlas
- Homologous match to J3_8C3A_044
- Geometric discrepancy: 0.3217
- The information below is about J3_8C3A_044
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_37047.4
- Basepair signature
- cWW-cSS-cSH-F-tWH-F-cWW-cSH-F-cWW-F
- Number of instances in this motif group
- 5
Unit IDs
5MEI|1|A|C|1470
5MEI|1|A|A|1471
5MEI|1|A|C|1472
5MEI|1|A|U|1473
5MEI|1|A|G|1474
*
5MEI|1|A|C|1533
5MEI|1|A|G|1534
5MEI|1|A|U|1535
5MEI|1|A|G|1536
5MEI|1|A|C|1537
5MEI|1|A|U|1538
5MEI|1|A|G|1539
5MEI|1|A|G|1540
*
5MEI|1|A|C|1571
5MEI|1|A|G|1572
5MEI|1|A|A|1573
5MEI|1|A|G|1574
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain G
- 40S ribosomal protein S5
- Chain T
- 40S ribosomal protein S18-A
- Chain U
- 40S ribosomal protein S19-A
- Chain a
- 40S ribosomal protein S25-A
Coloring options: