J3_5MEI_068
3D structure
- PDB id
- 5MEI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of Agelastatin A bound to the 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.5 Å
Loop
- Sequence
- CAU*AGAUGUA*UCUG
- Length
- 14 nucleotides
- Bulged bases
- 5MEI|1|1|U|3319
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5MEI_068 not in the Motif Atlas
- Geometric match to J3_5TBW_069
- Geometric discrepancy: 0.0727
- The information below is about J3_5TBW_069
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_42762.1
- Basepair signature
- cWW-cWW-F-cWW-F-F-F-cWW-F
- Number of instances in this motif group
- 1
Unit IDs
5MEI|1|1|C|3298
5MEI|1|1|A|3299
5MEI|1|1|U|3300
*
5MEI|1|1|A|3314
5MEI|1|1|G|3315
5MEI|1|1|A|3316
5MEI|1|1|U|3317
5MEI|1|1|G|3318
5MEI|1|1|U|3319
5MEI|1|1|A|3320
*
5MEI|1|1|U|3387
5MEI|1|1|C|3388
5MEI|1|1|U|3389
5MEI|1|1|G|3390
Current chains
- Chain 1
- 25S ribosomal RNA
Nearby chains
- Chain AE
- 60S ribosomal protein L31-A
- Chain k
- 60S ribosomal protein L3
- Chain x
- 60S ribosomal protein L17-A
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