J3_5MMI_007

3D structure

PDB id

5MMI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the large subunit of the chloroplast ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGAAAA*UAG*CUAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5MMI_007 not in the Motif Atlas

Homologous match to J3_5J7L_041

Geometric discrepancy: 0.0985

The information below is about J3_5J7L_041

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32852.6

Basepair signature

cWW-tSH-F-F-F-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

5MMI|1|A|C|1319
5MMI|1|A|G|1320
5MMI|1|A|A|1321
5MMI|1|A|A|1322
5MMI|1|A|A|1323
5MMI|1|A|A|1324
*
5MMI|1|A|U|1661
5MMI|1|A|A|1662
5MMI|1|A|G|1663
*
5MMI|1|A|C|1675
5MMI|1|A|U|1676
5MMI|1|A|A|1677
5MMI|1|A|G|1678

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 6

plastid ribosomal protein cL37, PSRP5