J3_5NDK_004
3D structure
- PDB id
- 5NDK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of aminoglycoside TC007 co-crystallized with 70S ribosome from Thermus thermophilus, three tRNAs and mRNA
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.95 Å
Loop
- Sequence
- CUAG*CGAAG*CGUUAAG
- Length
- 16 nucleotides
- Bulged bases
- 5NDK|1|13|U|1494, 5NDK|1|13|A|1496
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5NDK_004 not in the Motif Atlas
- Homologous match to J3_4LFB_001
- Geometric discrepancy: 0.0807
- The information below is about J3_4LFB_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_02285.1
- Basepair signature
- cWW-tWW-tHS-F-cWW-tHS-cWW-F
- Number of instances in this motif group
- 2
Unit IDs
5NDK|1|13|C|1455
5NDK|1|13|U|1456
5NDK|1|13|A|1457
5NDK|1|13|G|1458
*
5NDK|1|13|C|1480
5NDK|1|13|G|1481
5NDK|1|13|A|1482
5NDK|1|13|A|1483
5NDK|1|13|G|1484
*
5NDK|1|13|C|1491
5NDK|1|13|G|1492
5NDK|1|13|U|1493
5NDK|1|13|U|1494
5NDK|1|13|A|1495
5NDK|1|13|A|1496
5NDK|1|13|G|1497
Current chains
- Chain 13
- 16S ribosomal RNA
Nearby chains
- Chain 1E
- 30S ribosomal protein S2
- Chain 7E
- 30S ribosomal protein S8
- Chain Y1
- mRNA
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