J3_5NDK_051
3D structure
- PDB id
- 5NDK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of aminoglycoside TC007 co-crystallized with 70S ribosome from Thermus thermophilus, three tRNAs and mRNA
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.95 Å
Loop
- Sequence
- CC*GUGGAU*AAUCG
- Length
- 13 nucleotides
- Bulged bases
- 5NDK|1|1H|G|2846
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5NDK_051 not in the Motif Atlas
- Homologous match to J3_9DFE_019
- Geometric discrepancy: 0.1401
- The information below is about J3_9DFE_019
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_76911.2
- Basepair signature
- cWW-tHS-F-F-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
5NDK|1|1H|C|2827
5NDK|1|1H|C|2828
*
5NDK|1|1H|G|2844
5NDK|1|1H|U|2845
5NDK|1|1H|G|2846
5NDK|1|1H|G|2847
5NDK|1|1H|A|2848
5NDK|1|1H|U|2849
*
5NDK|1|1H|A|2895
5NDK|1|1H|A|2896
5NDK|1|1H|U|2897
5NDK|1|1H|C|2898
5NDK|1|1H|G|2899
Current chains
- Chain 1H
- 23S ribosomal RNA
Nearby chains
- Chain 21
- 50S ribosomal protein L3
- Chain 98
- 50S ribosomal protein L17
- Chain B8
- 50S ribosomal protein L19
- Chain N8
- 50S ribosomal protein L32
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