J3_5NGM_017

3D structure

PDB id

5NGM (explore in PDB, NAKB, or RNA 3D Hub)

Description

2.9S structure of the 70S ribosome composing the S. aureus 100S complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CUAA*UGCAG*CAUUAAG

Length

16 nucleotides

Bulged bases

5NGM|1|Aa|U|880

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5NGM_017 not in the Motif Atlas

Homologous match to J3_5J7L_004

Geometric discrepancy: 0.1396

The information below is about J3_5J7L_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85054.4

Basepair signature

cWW-tWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

3

Unit IDs

5NGM|1|Aa|C|834
5NGM|1|Aa|U|835
5NGM|1|Aa|A|836
5NGM|1|Aa|A|837
*
5NGM|1|Aa|U|866
5NGM|1|Aa|G|867
5NGM|1|Aa|C|868
5NGM|1|Aa|A|869
5NGM|1|Aa|G|870
*
5NGM|1|Aa|C|877
5NGM|1|Aa|A|878
5NGM|1|Aa|U|879
5NGM|1|Aa|U|880
5NGM|1|Aa|A|881
5NGM|1|Aa|A|882
5NGM|1|Aa|G|883

Current chains

Chain Aa

16S ribosomal RNA

Nearby chains

Chain Ab

30S ribosomal protein S2

Chain Ah

30S ribosomal protein S8